PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0105900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 698aa MW: 77417.1 Da PI: 6.3497

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0105900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.7	6e-26	70	160	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+ +GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + +++++ r+ tr+gCka+l++kk +kw+vtk+ + HnH ORGLA03G0105900.1 70 DFYSKYARYAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEnlhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKIHNHG 160 6*****************************************999998899999********************************5 PP
2	FAR1	86.6	3.6e-27	207	300	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + +k ++++r+r+ tr+gCka+++vk++++gkw+v+k+e+eHnH+ ORGLA03G0105900.1 207 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdgGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHS 298 9****************************************9999999999999*********************************9 PP FAR1 89 la 90 l ORGLA03G0105900.1 299 LL 300 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-23	70	160	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-24	207	300	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MEGVVTSSVG EPNQDNEPRD SSIELPRVIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM 60 EFESEDAARD FYSKYARYAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV 120 DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKIHNHG PVPPRKPHAG EHHDCDLMEN 180 PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL 300 SSRAVPITSN DASREVIDFA ATSNDPNEVK AEGCSTGIQC NSTDSLTVLY NHLCQEAIKF 360 AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSNDDKQK 420 TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAGEVKH VSESSCLAAN 480 RKEDSSQKSQ GKDERFHVLS KETTVAIPAI PLTLYMPIMK NPTGDSADGR YRLLAAPIEA 540 VPISYRPAEP IQQPHGSFPN SGPLPGFLPK LYKRGKGPNS LVHATALACG ARVVPPEEAA 600 SLIKAIESKI RSGGATIAKL PSSSLTPLIP EVASMSSSSE DDEENDHSEP LMASVEHNCH 660 DQSSEEMKLE ADPPSELETE AENCSAQPEN ENNGPTHC

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MEGVVTSSVG EPNQDNEPRD SSIELPRVIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM  60
EFESEDAARD FYSKYARYAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV  120
DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKIHNHG PVPPRKPHAG EHHDCDLMEN  180
PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL  300
SSRAVPITSN DASREVIDFA ATSNDPNEVK AEGCSTGIQC NSTDSLTVLY NHLCQEAIKF  360
AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSNDDKQK  420
TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINAGEVKH VSESSCLAAN  480
RKEDSSQKSQ GKDERFHVLS KETTVAIPAI PLTLYMPIMK NPTGDSADGR YRLLAAPIEA  540
VPISYRPAEP IQQPHGSFPN SGPLPGFLPK LYKRGKGPNS LVHATALACG ARVVPPEEAA  600
SLIKAIESKI RSGGATIAKL PSSSLTPLIP EVASMSSSSE DDEENDHSEP LMASVEHNCH  660
DQSSEEMKLE ADPPSELETE AENCSAQPEN ENNGPTHC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0105900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066641	0.0	AK066641.1 Oryza sativa Japonica Group cDNA clone:J013072M14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630687.1	0.0	uncharacterized protein LOC4332292
TrEMBL	I1P9L3	0.0	I1P9L3_ORYGL; Uncharacterized protein
STRING	ORGLA03G0105900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-31	FAR1 family protein