PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0122200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 191aa    MW: 19708.4 Da    PI: 7.0992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0122200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00175274123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C++ F++   L  H  +H
  ORGLA03G0122200.1 52 FECKTCNRQFPSFQALGGHRASH 74
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.67E-850117No hitNo description
PfamPF139121.2E-125276IPR007087Zinc finger, C2H2
SMARTSM003550.165274IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8275279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PfamPF139124.2E-994119IPR007087Zinc finger, C2H2
SMARTSM003552.595117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAYGKRPRQQ AEEAAFSLFD SSDMARIMLL FSGAHGGGGG AAAAASPPER MFECKTCNRQ  60
FPSFQALGGH RASHKKPRLA DGDPAAEAPA KPKVHGCSIC GLEFAVGQAL GGHMRRHRAV  120
MADGLGLGLS LGLGIGVVGQ SDDDGGKKKA AAAAAAELVF DLNAPAIEEE PDRARPAGLA  180
VEFPVVVDFP C
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0122200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370690.0AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAK1113380.0AK111338.1 Oryza sativa Japonica Group cDNA clone:002-181-F05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630125.11e-104zinc finger protein ZAT7
TrEMBLI1PA261e-133I1PA26_ORYGL; Uncharacterized protein
STRINGORGLA03G0122200.11e-133(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-26C2H2 family protein