PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0132100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 214aa    MW: 23721 Da    PI: 10.3133
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0132100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.87.9e-1020102284
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                        W++ e+ aLi+a   ++ + +rg l +++W++ ++++      + r  +r+  qC+ + + l+ ryk++ +          s +++f++
  ORGLA03G0132100.1  20 WSDGETAALIDAWGPLHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRAQCRARVQTLKERYKRELAKPPP------SGWRHFSR 102
                        ***************************************999888889*******************98665553......24555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-1718105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSSSKPSPQQ QQQQRANEWW SDGETAALID AWGPLHVARS RGPLPAKDWR AAASAVNARR  60
AAAGRRHNRT RAQCRARVQT LKERYKRELA KPPPSGWRHF SRLQEFLLAG PPPGFPPKTM  120
PPASVKKEEE EECQDEAVGG GGGSGGLLGR WVVPTRPRNG AAAWCPVGVV VTKLAEVYER  180
VELARLEVEK EKVAMEMEKA MQEAVKLKEE KLDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0132100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131300.0AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880270.11e-151uncharacterized protein LOC4332524
TrEMBLI1PAC51e-152I1PAC5_ORYGL; Uncharacterized protein
STRINGORGLA03G0132100.11e-153(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.22e-07sequence-specific DNA binding transcription factors