PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0132200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 255aa    MW: 27438.1 Da    PI: 10.3418
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0132200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.92.6e-082194270
           trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70
                       W++ e+ aL++a   ++ r   g l+ ++W++ ++++     +++   r+  qCk++++ l+kr k+++ ++k+
  ORGLA03G0132200.1 21 WSDGETSALLDAWGPRHIRAAGGPLRTADWRACAAAVtarraAAGRAPRTVDQCKNRLDYLKKRLKAERSRSKG 94
                       *************************************9999888889********************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-132096No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MATRRRAAAP PQPPAWTPEP WSDGETSALL DAWGPRHIRA AGGPLRTADW RACAAAVTAR  60
RAAAGRAPRT VDQCKNRLDY LKKRLKAERS RSKGAPAPPP PPPSVDRLRA LLRLAPSVPP  120
GFTSRGGAMP KVGEEEQEEE EEKAESFAAP LPRSWPSVPK RPRTAVALLP LSSSSGHQHG  180
DGGGTPCTEV AAALDRLAGT YERVEVAKQK EATRLEERRL EAMRDLEIER MRILVDVAIS  240
ASAVADTATA ASSSW
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0132200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131300.0AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629393.11e-177uncharacterized protein LOC4332525
TrEMBLA0A0E0GL551e-177A0A0E0GL55_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NTR31e-177A0A0E0NTR3_ORYRU; Uncharacterized protein
TrEMBLI1PAC61e-177I1PAC6_ORYGL; Uncharacterized protein
TrEMBLQ10MV01e-177Q10MV0_ORYSJ; Os03g0294500 protein
STRINGORUFI03G14370.11e-178(Oryza rufipogon)
STRINGONIVA03G14960.11e-178(Oryza nivara)
STRINGORGLA03G0132200.11e-178(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140221313