PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0141100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 170aa    MW: 18766.4 Da    PI: 6.5347
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0141100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.6e-112079362
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                       e +   rk +NR++A+rsR +K+++++ L+ ++++L  eN+a++  +    + +  +++e
  ORGLA03G0141100.1 20 EERQRNRKRSNRLSAQRSRMKKQQYVDGLAVEAEQLRRENDAMRAGAGAVLQRCRLVEQE 79
                       445556888***********************************9887777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.5E-101571No hitNo description
SMARTSM003388.6E-121782IPR004827Basic-leucine zipper domain
PfamPF001705.9E-81968IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7142063IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.95E-82266No hitNo description
CDDcd147021.80E-132374No hitNo description
PROSITE patternPS0003602640IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSVAPATEGS ARRSAAAEEE ERQRNRKRSN RLSAQRSRMK KQQYVDGLAV EAEQLRREND  60
AMRAGAGAVL QRCRLVEQEN RVLAAHAREL CSALQLRASQ LRVLGEVAGV PLDVPDVADH  120
LVQLYGGDLG MTPLSPPPLL PPLPPQIEML FFQPDSVMDP VSMLQGYENI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0141100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631799.12e-92ocs element-binding factor 1
TrEMBLI1PAL51e-118I1PAL5_ORYGL; Uncharacterized protein
STRINGORGLA03G0141100.11e-118(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125042837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.16e-08basic leucine-zipper 44