PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0143400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 159aa MW: 18224.8 Da PI: 11.6898

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0143400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.9	1.9e-12	33	78	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +WT+eEd l ++ + G+++W+++a++m+ +R++ qc++rw+++l ORGLA03G0143400.1 33 AWTPEEDAVL-RLAMENGSRHWRRVAAKMPrRRRSPAQCRDRWRDHL 78 7***9877.5667899999*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.016	26	82	IPR017930	Myb domain
SMART	SM00717	2.2E-7	30	80	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-11	33	78	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-15	33	132	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-15	33	90	IPR009057	Homeodomain-like
CDD	cd00167	4.94E-9	33	78	No hit	No description
SMART	SM00717	3.7	83	134	IPR001005	SANT/Myb domain
Pfam	PF13921	3.3E-5	87	133	No hit	No description
PROSITE profile	PS50090	5.808	87	132	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.8E-5	91	131	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDMELSSSST TVASSPASPP LGRCVVRIRL PPAWTPEEDA VLRLAMENGS RHWRRVAAKM 60 PRRRRSPAQC RDRWRDHLAR DVFHRHFTSA DDTELARLCL HLDDAGHRWK HVSRAVYGRS 120 SCAVKRRWRE LRKSDAFLSA LWRPRTTAPT ANAAITTTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3osf_A	5e-13	25	128	1	103	MYB21
3osf_D	5e-13	25	128	1	103	MYB21
3osg_A	5e-13	25	128	1	103	MYB21
3osg_D	5e-13	25	128	1	103	MYB21
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0143400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213123	0.0	AC213123.1 Oryza glaberrima clone OG_BBa0005O15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629497.1	1e-101	transcription factor MYB44-like
TrEMBL	I1PAN8	1e-109	I1PAN8_ORYGL; Uncharacterized protein
STRING	ORGLA03G0143400.1	1e-110	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-11	myb domain protein r1