PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0233800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 752aa MW: 85618 Da PI: 6.4206

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0233800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	42.5	1.1e-13	356	425	1	70
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 l++lL++cA+avs ++++la+ +L+ ++++asp+gd qRla +++ L rl++++s++y+++ +++ + ORGLA03G0233800.1 356 LRTLLINCAQAVSVSNHSLASDILKIIRHHASPTGDDSQRLALCLAYCLDVRLTGTGSQIYHKFITKRRN 425 6789**********************************************************99877766 PP
2	GRAS	214	8.2e-66	430	660	110	338
GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 +vHiiDf+i G+QWp+L+++La+ ++gpp+lRiTg++ pesg + +++g rLa++A+++++pfe++ + ++++e+l++e+++++++ ORGLA03G0233800.1 430 LKVHIIDFGICFGFQWPSLFEELAKIEDGPPKLRITGIELPESGfrPYARSNNIGLRLADYAKTFNIPFEYQHISSNKWEALSPEDFNIEKD 521 58***************************************999999********************9999*********** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 E+l+Vn++++++ l de+ s++s+r++vL++++ ++Pkv+v + +++ + Fl+rf e +++y +lfd+l++++pr++e+r+ +Er + + ORGLA03G0233800.1 522 EVLIVNCIYRMKDLGDETISINSARSRVLNTIRMMKPKVFVQGVLNGSYGVPFFLTRFKEVMYHYNSLFDMLDKNIPRDNETRMIIERDIYQ 613 *************************************************************************************999 PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 nv+aceg er+er e+++kW+ r +aG+ ++pl+ ++ + + ORGLA03G0233800.1 614 YIMLNVIACEGPERIERPESYKKWKVRNLKAGLVQLPLNPAIVRETQ 660 999*********************************998887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.828	330	676	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-11	356	425	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-63	430	660	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
FMVFCSLRLF CLFLVQTTQE PGLPRIVVRS NMGSDDNKRF DDFHVITNGP GSDAYSNEES 60 INLDSYIAPS TSFCSKIYNP QLYVEKGNGT TDWCQISGGD YPEKSSINSD ITLSYIDKIL 120 MQEDIDDRGN EDTALQAMEE PFYELLGEKY PAFPQQQPLC VCDHLQNFSA NTDKSNGHAC 180 NTWSVTRMTN ISSSMNSNGN FQGFQFPWSL SSITRETEQF THHSNRMVVG LKVDGLSISE 240 KPSQDNCSLQ IDAHYMRKHP LFEVHGRKSY PCIEDLDLLE GRSNKQYAIY YDEPIRDEMF 300 DNVLLCSDHK PLDEGVSLSR AMTNNSSKSS QIGQGKTSAR RKTTGKRIQK RDVVDLRTLL 360 INCAQAVSVS NHSLASDILK IIRHHASPTG DDSQRLALCL AYCLDVRLTG TGSQIYHKFI 420 TKRRNVKDIL KVHIIDFGIC FGFQWPSLFE ELAKIEDGPP KLRITGIELP ESGFRPYARS 480 NNIGLRLADY AKTFNIPFEY QHISSNKWEA LSPEDFNIEK DEVLIVNCIY RMKDLGDETI 540 SINSARSRVL NTIRMMKPKV FVQGVLNGSY GVPFFLTRFK EVMYHYNSLF DMLDKNIPRD 600 NETRMIIERD IYQYIMLNVI ACEGPERIER PESYKKWKVR NLKAGLVQLP LNPAIVRETQ 660 DMSSDQASIR LCLVCYGNIL SWPHPPEAEG TYWSGVESDR VYRDCSLNNR GPLYNGIPFL 720 NGMIPVSDDS YHISGDTREI SCGIKRFLPR IG

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

FMVFCSLRLF CLFLVQTTQE PGLPRIVVRS NMGSDDNKRF DDFHVITNGP GSDAYSNEES  60
INLDSYIAPS TSFCSKIYNP QLYVEKGNGT TDWCQISGGD YPEKSSINSD ITLSYIDKIL  120
MQEDIDDRGN EDTALQAMEE PFYELLGEKY PAFPQQQPLC VCDHLQNFSA NTDKSNGHAC  180
NTWSVTRMTN ISSSMNSNGN FQGFQFPWSL SSITRETEQF THHSNRMVVG LKVDGLSISE  240
KPSQDNCSLQ IDAHYMRKHP LFEVHGRKSY PCIEDLDLLE GRSNKQYAIY YDEPIRDEMF  300
DNVLLCSDHK PLDEGVSLSR AMTNNSSKSS QIGQGKTSAR RKTTGKRIQK RDVVDLRTLL  360
INCAQAVSVS NHSLASDILK IIRHHASPTG DDSQRLALCL AYCLDVRLTG TGSQIYHKFI  420
TKRRNVKDIL KVHIIDFGIC FGFQWPSLFE ELAKIEDGPP KLRITGIELP ESGFRPYARS  480
NNIGLRLADY AKTFNIPFEY QHISSNKWEA LSPEDFNIEK DEVLIVNCIY RMKDLGDETI  540
SINSARSRVL NTIRMMKPKV FVQGVLNGSY GVPFFLTRFK EVMYHYNSLF DMLDKNIPRD  600
NETRMIIERD IYQYIMLNVI ACEGPERIER PESYKKWKVR NLKAGLVQLP LNPAIVRETQ  660
DMSSDQASIR LCLVCYGNIL SWPHPPEAEG TYWSGVESDR VYRDCSLNNR GPLYNGIPFL  720
NGMIPVSDDS YHISGDTREI SCGIKRFLPR IG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-29	360	652	8	329	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0233800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC109602	0.0	AC109602.6 Oryza sativa chromosome 3 BAC OSJNBa0087M10 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630113.1	0.0	scarecrow-like protein 14
TrEMBL	I1PD92	0.0	I1PD92_ORYGL; Uncharacterized protein
STRING	ORGLA03G0233800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-115	GRAS family protein