PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0243700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 204aa    MW: 23201.2 Da    PI: 9.8792
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0243700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-1834116997
                        HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         + + + +++p +f++++ggk   + t++le+++g  + v++  + + +++v++ GW+ Fv+a+++k+gD+++F+++++s+f   v+++
  ORGLA03G0243700.1  34 TTDSMHSMIIPDRFVNHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTVIQCGWEAFVDAHHIKVGDSLLFRHIENSCF--EVMIL 116
                        34455679*******888888..5669***************..**************************************..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2423121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-2026121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.47826119IPR003340B3 DNA binding domain
CDDcd100174.55E-1928117No hitNo description
SMARTSM010191.8E-1129119IPR003340B3 DNA binding domain
PfamPF023621.2E-1635116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAGGGSRMKK SCACCKRYLE HLGGKMSCFL IRMTTDSMHS MIIPDRFVNH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT VIQCGWEAFV DAHHIKVGDS LLFRHIENSC FEVMILDSDG  120
CERNMFPXKA TGMEFLMNLR RVRILKALLA LPTFYHGRAR VVYLHCKRRX SKRKYDPSNP  180
KFPFMQQSXT RAILGXLVPL ASXN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173RRXSKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0243700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-130CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689972.12e-73PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0619800-like
SwissprotQ10GP04e-87Y3198_ORYSJ; Putative B3 domain-containing protein Os03g0619850
TrEMBLI1PDJ11e-146I1PDJ1_ORYGL; Uncharacterized protein
STRINGORGLA03G0243700.11e-147(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-13B3 family protein