PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0244700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1028aa    MW: 117819 Da    PI: 10.0375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0244700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.1e-20149238199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffkv+     +++ ++++p kfae++  +   + t++l+ ++g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f  
  ORGLA03G0244700.1 149 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--EKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF-- 231
                        56666..445555.6********888655..4459***************..**************************************.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                         vk+f+ 
  ORGLA03G0244700.1 232 EVKIFDP 238
                        9999986 PP
2B337.83.3e-12337410177
                        EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                        f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+vk++++k++ r +l+kGW++F ++n+L++g
  ORGLA03G0244700.1 337 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQVG 410
                        77889999999999999**********76555....3455.667*********77666666.89**************99 PP
3B3665.6e-214605411299
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++r+++p kfa++++g+   skt++le +sg +++v++  +kk +  vl++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  ORGLA03G0244700.1 460 FHKRMTIPDKFARHFKGV--ISKTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 541
                        4568********999999..899****************..*******************************976..88889999985 PP
4B357.23e-18734820297
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        fkv+     ++  r+++p++f++ + gk   ++t++l+ ++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+   +
  ORGLA03G0244700.1 734 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--K 816
                        5555..44444.57********555666..66789999999********..********************************986555..7 PP

                        EEEE CS
                 B3  94 vkvf 97 
                        v +f
  ORGLA03G0244700.1 817 VLIF 820
                        7777 PP
5B347.33.6e-1594410271299
                         HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3   12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
                         ks+ + + +++a+ +    ke +  +t  +++g+ Wev ++ +k  ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  ORGLA03G0244700.1  944 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 1027
                         56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-24143241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-25143241IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.689146239IPR003340B3 DNA binding domain
CDDcd100171.38E-20148237No hitNo description
PfamPF023629.9E-19149237IPR003340B3 DNA binding domain
SMARTSM010191.3E-13149239IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-25325410IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16330413IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-14335410No hitNo description
PfamPF023621.0E-10337411IPR003340B3 DNA binding domain
SMARTSM010190.0018337423IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306338429IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-25444555IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-23446544IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.915449542IPR003340B3 DNA binding domain
CDDcd100171.77E-20450540No hitNo description
PfamPF023621.5E-18452540IPR003340B3 DNA binding domain
SMARTSM010191.4E-11452542IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-5630696IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-22726825IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.704730823IPR003340B3 DNA binding domain
CDDcd100175.93E-21733820No hitNo description
PfamPF023624.6E-16733820IPR003340B3 DNA binding domain
SMARTSM010193.0E-12733823IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-21743831IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-209261025IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-189271025IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2669331028IPR003340B3 DNA binding domain
CDDcd100172.54E-139351026No hitNo description
SMARTSM010195.6E-89361028IPR003340B3 DNA binding domain
PfamPF023621.4E-139431027IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1028 aa     Download sequence    Send to blast
TAPFPASPVR LHPCPLLFSH PHLLGSDYFA FSVKGRGAHL ESMRVENKRG NRSWGTDAKR  60
THPNSIFNQL VRYGYIGTGF PDMNCSLTWS LTGGPSTLSL PSFFPSAHLL LLLALFFLCI  120
QSNHRMSKSG CERCRGRGFW DTDDQDTYFF KVMIGGFRRQ MTIPYKFAEN FRDQIQGTIK  180
LKARNGNTCS VLVEKCSNKL VLTKGWAEFA NSHDIKMGDF LVFRYTGNSQ FEVKIFDPSG  240
CVKAASHNAV NIGQHAQNMQ GDPIEILSCS DEHLRAQSLT TERQNQPEKD VIDNCNKKMK  300
TEHASSSEDD QETPTAEVHR MKVEEMVRAI HSNHPVFVAV MKKSNVTRQP CYVAISRKYA  360
NEYFPGGDQM LTLQRHGKRW QVKFCISKRK LRMLSKGWRK FTRDNELQVG APLALFITLF  420
FSPHFRKMKK CGQKMRKLNT RSTARDDQEK YFFKVMIGDF HKRMTIPDKF ARHFKGVISK  480
TIKLEPRSGY TFDVQVTKKL NILVLGSGWE SFVNAHDLNM GDFLVFKYNG DFLLQVLIFD  540
PSGCEKSTSC SMENAIDHVG QGWKEHNDIS TSYHDQPKGN KHWMQKDSSS KGNKIGNTRS  600
SNTPSKFSGC ILPRGTCLPV VQEKKMKEKI QAIHSKTPMY GNVMTKCNVS GSPCVLEITQ  660
LYDDAYLPFN NGQELMLRHR DKSWKVRFYR FKNKSRKLTQ ASSLYKMRRP GARCREGHAH  720
FNGNHIDGQY KNFFKVMIGR FRERMIIPNE FLQYFRGKIP RTIKLQLRDG CTYDVQVTKN  780
LGKISLQSGW KAFVTAHDLQ MGDFLVFSYD GISKLKVLIF GPSGCEKVHS RPTLKNATHC  840
GEKWEEPLHI SSNSHDLPVK SPQNVSKSEK QWDSSEQEND TANIEEVALQ GDDLQGHPVL  900
NCILPKHTRL TDMQKQQLES KVGAIHSEIP IYGCILRKSR VHGKSQTVDI CREYADVYLP  960
FKELNMTLQR HGKNWEVLCR TKDTRTKRLS TGWSRFAQEN NLQVGDICLF ELLKKKEYSM  1020
NVHIIPKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0244700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880058.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLI1PDK10.0I1PDK1_ORYGL; Uncharacterized protein
STRINGORGLA03G0244700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-23B3 family protein