PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0259500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1027aa MW: 112074 Da PI: 6.0631

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0259500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101	1.2e-31	44	145	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w vtkl ORGLA03G0259500.1 44 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNevspvaagsgedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKL 135 ******************************************************99999*************************** PP FAR1 82 eleHnHelap 91 e+ HnH+l+p ORGLA03G0259500.1 136 ETAHNHPLVP 145 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-29	44	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-22	263	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.027	529	577	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-8	551	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-7	552	579	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence Send to blast
MEADAAGNGS AAAAAAYAAR AGVYDGVDPF EGMEFDDEED AWTFYNVYAH RVGFSTRISV 60 MHRSRRDGSI MSRQFVCAKE GFRTYRGKNE VSPVAAGSGE DSGRGRRTRA VTRVGCKAMI 120 RVKKQDNGRW AVTKLETAHN HPLVPPNQAH CLRPHKPLSE CGKQRQFGIP RNGGMLLAIE 180 PPPPPISPPV PQTSVLQVVP HYTRDGIGDH ARVILDYVKR MQAEDPAFFY AMQFIDGHPV 240 GNIFWADARA RMAYKHFGDA VFLDDYCKRN KYQLPLVAFT GVNHHCQPVL FGCAIIGDNS 300 EASFVWLFET LLLAMSGHHP DSLTTEHDSA IQLAALKVLP RTRHRFCRWH ILNETHDKLS 360 HLSDEFPSLH EELVNCINMP ETIDEFEVNF KALISKVGPG NSEWLYSVYN CRQHWVPVYL 420 RDTFFGDESS KEECASRSSF FDGYISAKTD PQSFIQQYEK ALDCCYEKEV KEEFETKYSL 480 PEIKTSSPIE KQGADLYTRS MFLKFQQELV DASVSSLEVM KEDGKSRIYK VTKSAGSEKP 540 HMVEFNSFGS SATCSCQMFE HLGIVCRHIL TVFGTQGVSS LPSQYIVKRW TKYAMERSPD 600 KKVDEVSKVN EPKEEQKSGA EDGEQSQTWR YNSLCREALR YAEEGASSVE VYIVAMQALQ 660 EAANKVNMAK RGIGQVAPNA PLAVMPIAAQ LPAEGFRNVP EISFNQRKKR KRNSNNKTTE 720 NSSNQLMYLQ QPVNFLFVAP GTSSGPQGPS QIVAAVPVSS SAPHGQTSSA NHPSDGNTTS 780 CSVAAQKNSD LSNYSGSAPS LGNVVPEGEI KSSGFASQIK ESHELSQGNG NKGNNVNMAS 840 STSSPQLVTV PVGLCLPSMD SSKISADAIN STNSGSMISN GNVSFGLCQS QSTNADPRST 900 PEGSSIRAAA IAAGARIASP SDAASIIKAA QSKGAIHIRP GEGVPNYLKP LAPQPLSSLP 960 PGSIPNSVHP SSSHAQPGQC SFGDSAAAKD AIFGSTDSSD DDEYDEDDDT DDNDEDEGIT 1020 GDEVEQE

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence Send to blast

MEADAAGNGS AAAAAAYAAR AGVYDGVDPF EGMEFDDEED AWTFYNVYAH RVGFSTRISV  60
MHRSRRDGSI MSRQFVCAKE GFRTYRGKNE VSPVAAGSGE DSGRGRRTRA VTRVGCKAMI  120
RVKKQDNGRW AVTKLETAHN HPLVPPNQAH CLRPHKPLSE CGKQRQFGIP RNGGMLLAIE  180
PPPPPISPPV PQTSVLQVVP HYTRDGIGDH ARVILDYVKR MQAEDPAFFY AMQFIDGHPV  240
GNIFWADARA RMAYKHFGDA VFLDDYCKRN KYQLPLVAFT GVNHHCQPVL FGCAIIGDNS  300
EASFVWLFET LLLAMSGHHP DSLTTEHDSA IQLAALKVLP RTRHRFCRWH ILNETHDKLS  360
HLSDEFPSLH EELVNCINMP ETIDEFEVNF KALISKVGPG NSEWLYSVYN CRQHWVPVYL  420
RDTFFGDESS KEECASRSSF FDGYISAKTD PQSFIQQYEK ALDCCYEKEV KEEFETKYSL  480
PEIKTSSPIE KQGADLYTRS MFLKFQQELV DASVSSLEVM KEDGKSRIYK VTKSAGSEKP  540
HMVEFNSFGS SATCSCQMFE HLGIVCRHIL TVFGTQGVSS LPSQYIVKRW TKYAMERSPD  600
KKVDEVSKVN EPKEEQKSGA EDGEQSQTWR YNSLCREALR YAEEGASSVE VYIVAMQALQ  660
EAANKVNMAK RGIGQVAPNA PLAVMPIAAQ LPAEGFRNVP EISFNQRKKR KRNSNNKTTE  720
NSSNQLMYLQ QPVNFLFVAP GTSSGPQGPS QIVAAVPVSS SAPHGQTSSA NHPSDGNTTS  780
CSVAAQKNSD LSNYSGSAPS LGNVVPEGEI KSSGFASQIK ESHELSQGNG NKGNNVNMAS  840
STSSPQLVTV PVGLCLPSMD SSKISADAIN STNSGSMISN GNVSFGLCQS QSTNADPRST  900
PEGSSIRAAA IAAGARIASP SDAASIIKAA QSKGAIHIRP GEGVPNYLKP LAPQPLSSLP  960
PGSIPNSVHP SSSHAQPGQC SFGDSAAAKD AIFGSTDSSD DDEYDEDDDT DDNDEDEGIT  1020
GDEVEQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	706	711	RKKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0259500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120778	0.0	AK120778.1 Oryza sativa Japonica Group cDNA clone:J023009J07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631605.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	I1PDZ9	0.0	I1PDZ9_ORYGL; Uncharacterized protein
STRING	ORGLA03G0259500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-167	FAR1-related sequence 5