PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0260500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 149aa    MW: 15538.9 Da    PI: 7.6222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0260500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY681.4e-2155112258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 
                        +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve   +dp + + ++Y g H+h
  ORGLA03G0260500.1  55 EDGYEWKKYGQKFIKNIQKNRSYFRCRDQRCGAKKKVEWHPHDPGLnLRVVYDGAHHH 112
                        7******************************************986479********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.249115IPR003657WRKY domain
SuperFamilySSF1182904.45E-2150115IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-2451115IPR003657WRKY domain
SMARTSM007741.5E-2154114IPR003657WRKY domain
PfamPF031064.5E-2055112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MASNSQTTTT GAGGGRGQGD DEEPTPTPPP APPPETAPST VGGGGGDGVQ LVMPEDGYEW  60
KKYGQKFIKN IQKNRSYFRC RDQRCGAKKK VEWHPHDPGL NLRVVYDGAH HHGSPSSAAG  120
EGGASAAAAA NQYDLSTQYF GGAGGPRSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0260500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1338591e-117AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence.
GenBankAP0149591e-117AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-117CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629814.12e-77probable WRKY transcription factor 2 isoform X1
TrEMBLA0A0D9ZB971e-105A0A0D9ZB97_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GR991e-105A0A0E0GR99_ORYNI; Uncharacterized protein
TrEMBLI1PE091e-105I1PE09_ORYGL; Uncharacterized protein
STRINGOGLUM03G28820.11e-106(Oryza glumipatula)
STRINGONIVA03G29220.11e-106(Oryza nivara)
STRINGORGLA03G0260500.11e-106(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-12WRKY DNA-binding protein 57