PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0270100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 155aa    MW: 17053.4 Da    PI: 10.4295
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0270100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.9e-0965982255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55
                        +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  ORGLA03G0270100.1 65 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 98
                       69*****************************985 PP
2ELK37.26.4e-131839122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK +Ll+KYsgyL+sL+ E+s
  ORGLA03G0270100.1 18 ELKSHLLNKYSGYLSSLWRELS 39
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037897.1E-101839IPR005539ELK domain
PROSITE profilePS5121310.3531838IPR005539ELK domain
SMARTSM011884.0E-71839IPR005539ELK domain
PROSITE profilePS5007112.45538101IPR001356Homeobox domain
SuperFamilySSF466893.34E-1939111IPR009057Homeodomain-like
SMARTSM003891.8E-1140105IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-2643102IPR009057Homeodomain-like
CDDcd000869.40E-1347101No hitNo description
PfamPF059202.1E-165897IPR008422Homeobox KN domain
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MASAGLPEIT SPCAEDKELK SHLLNKYSGY LSSLWRELSK KKKKGKLPRD ARQKLLHWWQ  60
LHYRWPYPSE LEKAALAEST GLDAKQINNW FINQRKRHWK PTPLAMEYRS LQPAGAASYG  120
GASAGASTSG GGSAVVRGME GQHFTGGGAY PRGGP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0270100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0906831e-139AC090683.7 Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence.
GenBankAC1163691e-139AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAP0149591e-139AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-139CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628832.11e-108homeobox protein knotted-1-like 4
SwissprotQ75LX71e-109KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A0D3FMA61e-109A0A0D3FMA6_9ORYZ; Uncharacterized protein
STRINGOBART03G29150.11e-109(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-43KNOTTED-like from Arabidopsis thaliana