PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0270500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 150aa    MW: 17569.9 Da    PI: 9.8863
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0270500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.57.3e-11821152255
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yps++e++ LA+++gL+++qV++WF N+R ++
  ORGLA03G0270500.1  82 WPYPSEAEKAALAESTGLDKKQVTNWFINQRKRH 115
                        59*****************************985 PP
2ELK36.21.3e-123454222
                ELK  2 LKhqLlrKYsgyLgsLkqEFs 22
                        +++L++KYsgyL+sL++E+s
  ORGLA03G0270500.1 34 TRRHLMNKYSGYLNSLWTEIS 54
                       69******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011887.1E-53354IPR005539ELK domain
PROSITE profilePS512139.0273353IPR005539ELK domain
PfamPF037897.9E-93554IPR005539ELK domain
PROSITE profilePS5007112.03455118IPR001356Homeobox domain
SMARTSM003892.1E-1257122IPR001356Homeobox domain
SuperFamilySSF466891.03E-1857126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2562119IPR009057Homeodomain-like
CDDcd000864.06E-1264119No hitNo description
PfamPF059201.9E-1775114IPR008422Homeobox KN domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
IQNEDVIYDY EDEVAGGLPE KSAAFGENEV TTTTRRHLMN KYSGYLNSLW TEISNKKKNS  60
TGHLPRDARH KLLQWWHLHY RWPYPSEAEK AALAESTGLD KKQVTNWFIN QRKRHWKPKP  120
AAAMDAGFLQ MHPRCLNIPA WKYRFLQATS
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0270500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-136CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879711.18e-94putative homeobox protein knotted-1-like 5
SwissprotQ75LX94e-95KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5
TrEMBLI1PEA91e-109I1PEA9_ORYGL; Uncharacterized protein
STRINGORGLA03G0270500.11e-110(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-33KNOTTED-like from Arabidopsis thaliana