PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA03G0326300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 166aa MW: 19061.9 Da PI: 4.5924

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA03G0326300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.1	3.8e-13	65	110	1	46
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 e+e++r+rrk +NR++ArrsR+RK++++eeL+ +++ L aeN++L ORGLA03G0326300.1 65 EEERRRQRRKVSNRLSARRSRARKQQRLEELRGESARLRAENRELX 110 7899**************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-9	61	110	No hit	No description
SMART	SM00338	9.0E-5	64	129	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.7E-9	65	110	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	67	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.85E-8	69	112	No hit	No description
PROSITE pattern	PS00036	0	72	87	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MLSVQEALDF DLDAMTSGFG FTPWAADTCP TLEQLMASSA SPSPSSSLDD NAAAAEEENG 60 EVEEEEERRR QRRKVSNRLS ARRSRARKQQ RLEELRGESA RLRAENRELX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	88	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA03G0326300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC107207	0.0	AC107207.9 Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence.
GenBank	AC133450	0.0	AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630261.1	8e-70	ocs element-binding factor 1
TrEMBL	A0A0E0GUB1	2e-68	A0A0E0GUB1_ORYNI; Uncharacterized protein
TrEMBL	A0A0N7KI44	2e-68	A0A0N7KI44_ORYSJ; Os03g0770000 protein
STRING	OS03T0770000-00	3e-69	(Oryza sativa)
STRING	ONIVA03G37080.1	3e-69	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13845	24	29