PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0338000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 74aa    MW: 8180.19 Da    PI: 8.2198
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0338000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26065.31.4e-202171151
             DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpe 51
                       +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n  ++l+ + +
  ORGLA03G0338000.1 21 RCAACKFLRRRCSRDCVLAPHFPASDPHRYACVQRVFGAGNTARMLQVITD 71
                       6*********************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1242074IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-192170IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MSPGEEDVEA SSDSGGSATR RCAACKFLRR RCSRDCVLAP HFPASDPHRY ACVQRVFGAG  60
NTARMLQVIT DHYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0338000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0870961e-120AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence.
GenBankAP0149591e-120AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-120CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690105.19e-30PREDICTED: LOB domain-containing protein 24-like
SwissprotP594684e-21LBD24_ARATH; LOB domain-containing protein 24
TrEMBLI1PG847e-48I1PG84_ORYGL; Uncharacterized protein
STRINGORGLA03G0338000.11e-48(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1972078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-23LOB domain-containing protein 24