PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA03G0340500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 147aa    MW: 16347.8 Da    PI: 5.2555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA03G0340500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.7e-062411054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       + RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  ORGLA03G0340500.1  2 QLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 41
                       56******************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.493141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-4247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-11351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-11352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-6446No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MQLRRERIAE RMRALQELVP NTNKTDRAAM LDEILDYVKF LRLQVKVLSM SRLGGAGAVA  60
QLVADIPLSV KGEASDSGGN QQIWEKWSTD GTERQVAKLM EEDIGAAMQF LQSKALCMMP  120
ISLAMAIYDT QQTQDGQPVK HEPNTPS
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA03G0340500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683880.0AK068388.1 Oryza sativa Japonica Group cDNA clone:J013145C08, full insert sequence.
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650733.21e-102PREDICTED: transcription factor UNE12-like isoform X1
RefseqXP_015633087.11e-102transcription factor UNE12 isoform X1
SwissprotO227683e-60UNE12_ARATH; Transcription factor UNE12
TrEMBLI1PGA91e-104I1PGA9_ORYGL; Uncharacterized protein
STRINGORGLA03G0340500.11e-105(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]