PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0019100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 97aa    MW: 11313.9 Da    PI: 7.9071
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0019100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.27.7e-14543240
                TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                       ++++C+C ks+C+k+YC Cf+a  +Cs++C+C++CkN+e
  ORGLA04G0019100.1  5 QHRSCRCVKSNCVKLYCPCFSAYGYCSQNCRCTNCKNRE 43
                       6789*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.9E-10445IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163418.019597IPR005172CRC domain
PfamPF036386.2E-11743IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSNDQHRSCR CVKSNCVKLY CPCFSAYGYC SQNCRCTNCK NREYYEDFVE ERVDMIKMKN  60
PRAFDPKIVR VQDASEIEPQ SSNAVPMPEV QVPRTFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0019100.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315891e-106AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence.
GenBankAP0149601e-106AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633502.13e-58protein tesmin/TSO1-like CXC 4
RefseqXP_025880815.13e-58protein tesmin/TSO1-like CXC 4
TrEMBLA0A0D3FSK84e-66A0A0D3FSK8_9ORYZ; Uncharacterized protein
STRINGOBART04G02690.17e-67(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.12e-17Tesmin/TSO1-like CXC domain-containing protein