PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0027800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 184aa    MW: 18919.2 Da    PI: 6.9728
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0027800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.12.7e-3352131378
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78 
                         k  ++s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++       +ss
  ORGLA04G0027800.1  52 RKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAPpaavAIGSS 131
                        577899*********************************************************66666333222211222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-2856131IPR005333Transcription factor, TCP
PROSITE profilePS5136925.84857111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MMASSSDLIL YNLVPAQPLN PSAIPNPNPD LSIAAAEPPS SDGATPRRVR PRKSPSSSDR  60
HSKVAGRGRR VRIPAMVAAR VFQLTRELGH RTDGETIEWL LRQAEPSIIA ATGTGVTPEE  120
APPAAVAIGS SSVAAAAAAA GHGGAFVHVP YYTALLMQPP NADEPPMASA ASASGTTAAD  180
ENNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652RRVRPRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0027800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6070080.0AL607008.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence.
GenBankAL6629650.0AL662965.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633587.11e-127transcription factor PCF1
SwissprotO238751e-126PCF1_ORYSJ; Transcription factor PCF1
TrEMBLI1PJA91e-127I1PJA9_ORYGL; Uncharacterized protein
STRINGORGLA04G0027800.11e-127(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.18e-28TCP family protein