PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0048700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 329aa    MW: 34644.3 Da    PI: 10.33
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0048700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30250308259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs+fpr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  ORGLA04G0048700.1 250 ADDFSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPVDPSMLIVTYEGEHRHT 308
                        699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-20198247IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-31237308IPR003657WRKY domain
PROSITE profilePS5081129.459244310IPR003657WRKY domain
SuperFamilySSF1182903.27E-25247308IPR003657WRKY domain
SMARTSM007741.4E-36249309IPR003657WRKY domain
PfamPF031061.6E-25251307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MITMDLMSGY GRVDEQVAIQ EAAAAGLRGM EHLILQLSQT GTSERSPAPA PAQEQQQQVD  60
CREITDMTVS KFKKVISMLN RTGHARFRRG PVVAQSSGPA ASEPAPVRSS PSAVSRPMTL  120
DFTKSASGYG KDAGFSVSGI SAASSSFLSS VTGDGSVSNG RGGGSSSLML PPPPATSCGK  180
PPLSSAAAAA MSAGVGHKRK CHDHAHSENI AGGKYGSTGG RCHCSKRRKH RVKRTIRVPA  240
ISSKVADIPA DDFSWRKYGQ KPIKGSPFPR GYYKCSTLRG CPARKHVERD PVDPSMLIVT  300
YEGEHRHTPS AAGQDHPPAP PPPLALPLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20237307271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0048700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009540.0AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633572.10.0WRKY transcription factor WRKY51
SwissprotQ6IEN10.0WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLI1PJW80.0I1PJW8_ORYGL; Uncharacterized protein
STRINGORGLA04G0048700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-88WRKY DNA-binding protein 11