PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0074800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27781.4 Da    PI: 7.9383
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0074800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.3e-141153244
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       rie+  +r + f kR++g+ KKAeEL vLCda v  +++s +g
  ORGLA04G0074800.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLSCSG 53
                       8**************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-12264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.614253IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-17481IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-11424IPR002100Transcription factor, MADS-box
PfamPF003194.8E-171153IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-112439IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-113960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSGDDANPHH  60
FAAPATIENI VERYEHSQAA QKGVHGRCIL QKQRKSKDFQ VLKETIDKGP INDDMRPIDE  120
KDISTLNMDQ ISQIEILLED ELRWTRARKV VADRIARLQK KVQKKPATAE TESNSTEMPS  180
DHEKKQVAGG SQQSAEEEEM EVVLRHRLSL GTGDRDDGGG GAAEQRHRTT PPPAVDLNVP  240
CRDAGQLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0074800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117961e-111AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.11e-153truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLI1PKM90.0I1PKM9_ORYGL; Uncharacterized protein
STRINGORGLA04G0074800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1509655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-20AGAMOUS-like 8