PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0094900.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 985aa MW: 108787 Da PI: 9.1634

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0094900.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	220	308	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+ ++ + + +rtgC+a+l+++++k +k ev+ ++ HnH+l+ ORGLA04G0094900.1 220 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 308 6****************************************9988..9999***************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-20	220	308	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-19	442	520	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.336	706	742	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.8E-6	716	740	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-5	717	744	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNEAAGPP KPNPPITPAP ARNASAAPPS 60 GSPATAAAAA PVPSRKESGS TSAAAPAAAT RKASGVAAAT TGVLPRKPLG TTAPVAARNI 120 PATTAASRTA TRATTTTTAT SVSRRPAAAA AVASRIPLRA TAATTTHAAS RNPLTGAAAA 180 TATATVAAVG RGGFRAAPTR PEEYTPRMGM EFESEHEAYE FYRYYGWKVG FNVRKEYANK 240 SKKTGEITSR KFACSREGYR ANVKRGNHMV PMPDSRTGCN AHLVIRRKKP GAKLEVYAFQ 300 PRHNHPLFAT SCMPNPLQPN VVHWTTLPDA VTPPDLLMDG GEVGGQESTE ENSTASAGEG 360 RRQPLRTRRQ WEMKYGEAGA LLNYFQDQSL ANPSFYHAVQ LDVEDKVANV FWADPRMITD 420 YSQFGDVIAF DVVSRNSISL RHFASFVGCN NFGEPIVFGL ALMYDETAES FQWLFETFLH 480 AMSGRAPKTF FSHQDAVVAK AVSIVMPDTT HVICAWHLKH AATRNINQLK SDSDFMKEFK 540 ACINLYEEET EFLTSWDAMI NKHNLHDNVW LKKVFEEKEK WARPYMRGVF SAGMKGTRLN 600 DRFQSDVRDH LRPEVNILLL LRHLETVIND RRRKELEVEY SSRLKLPYFK IKAPILTQAF 660 EAYTNTIFPL FQEEYEEFQS AYIVNRDESG PCREYVVSVV EKEKRYTVYG NPIEQTVSCS 720 CKKFERNGFL CSHALKILDA MDIKYLPDRY IMKRWTKYAR TLMSGDVQGQ AIQADKLSES 780 SSRYQYMCPK YVRLVARASE CEESYRVLDQ CWVDLSNKVE EILQKQTCVD ATLTQTDVQN 840 LKVSLPSITN GTQAENIMDK SSGTTAKESK KKGQKNKIQS RNCIEKGLRK KQKVHSEQPA 900 EYALLGGSQS GNMFQAFEGP PNMSPLGTQT PTYKTYRGID LSSPMGPISY DEMPSGLDPT 960 FTTHLGFATY HTSQVSSSSP HNQAL

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNEAAGPP KPNPPITPAP ARNASAAPPS  60
GSPATAAAAA PVPSRKESGS TSAAAPAAAT RKASGVAAAT TGVLPRKPLG TTAPVAARNI  120
PATTAASRTA TRATTTTTAT SVSRRPAAAA AVASRIPLRA TAATTTHAAS RNPLTGAAAA  180
TATATVAAVG RGGFRAAPTR PEEYTPRMGM EFESEHEAYE FYRYYGWKVG FNVRKEYANK  240
SKKTGEITSR KFACSREGYR ANVKRGNHMV PMPDSRTGCN AHLVIRRKKP GAKLEVYAFQ  300
PRHNHPLFAT SCMPNPLQPN VVHWTTLPDA VTPPDLLMDG GEVGGQESTE ENSTASAGEG  360
RRQPLRTRRQ WEMKYGEAGA LLNYFQDQSL ANPSFYHAVQ LDVEDKVANV FWADPRMITD  420
YSQFGDVIAF DVVSRNSISL RHFASFVGCN NFGEPIVFGL ALMYDETAES FQWLFETFLH  480
AMSGRAPKTF FSHQDAVVAK AVSIVMPDTT HVICAWHLKH AATRNINQLK SDSDFMKEFK  540
ACINLYEEET EFLTSWDAMI NKHNLHDNVW LKKVFEEKEK WARPYMRGVF SAGMKGTRLN  600
DRFQSDVRDH LRPEVNILLL LRHLETVIND RRRKELEVEY SSRLKLPYFK IKAPILTQAF  660
EAYTNTIFPL FQEEYEEFQS AYIVNRDESG PCREYVVSVV EKEKRYTVYG NPIEQTVSCS  720
CKKFERNGFL CSHALKILDA MDIKYLPDRY IMKRWTKYAR TLMSGDVQGQ AIQADKLSES  780
SSRYQYMCPK YVRLVARASE CEESYRVLDQ CWVDLSNKVE EILQKQTCVD ATLTQTDVQN  840
LKVSLPSITN GTQAENIMDK SSGTTAKESK KKGQKNKIQS RNCIEKGLRK KQKVHSEQPA  900
EYALLGGSQS GNMFQAFEGP PNMSPLGTQT PTYKTYRGID LSSPMGPISY DEMPSGLDPT  960
FTTHLGFATY HTSQVSSSSP HNQAL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0094900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072998	0.0	AK072998.1 Oryza sativa Japonica Group cDNA clone:J023143C23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880889.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880890.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880891.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880892.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880893.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880894.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880895.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880896.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880897.1	0.0	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880898.1	0.0	protein FAR1-RELATED SEQUENCE 12
TrEMBL	I1PL80	0.0	I1PL80_ORYGL; Uncharacterized protein
STRING	ORGLA04G0094900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-90	FAR1-related sequence 5