PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0098100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 242aa    MW: 24513.9 Da    PI: 7.726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0098100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-2062111255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae+Aa+a++aa+++++g
  ORGLA04G0098100.1  62 KYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFATAEDAARAYDAAALRFRG 111
                        8********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-3261120IPR001471AP2/ERF domain
CDDcd000181.03E-1762121No hitNo description
PROSITE profilePS5103225.48862119IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2362120IPR016177DNA-binding domain
SMARTSM003807.0E-3562125IPR001471AP2/ERF domain
PfamPF008471.1E-1362111IPR001471AP2/ERF domain
PRINTSPR003671.3E-116374IPR001471AP2/ERF domain
PRINTSPR003671.3E-1185101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MALSEPDLAA ETEAIVSALT HVVAYGGGGP PPTEETAASA VTRTAPWRAD GARQGAVPAA  60
RKYRGVRRRP WGKWAAEIRD PHRAARVWLG TFATAEDAAR AYDAAALRFR GGHARLNFPE  120
DAAAADARRA TDAAAAAAAA SSAPAALLES QPGDVADCLD YSRILAGAPE RPTSSTVTDG  180
FFGGGGNGRF LHSWSIGTSP SSSGSGSGGA VGGGGGGGAP VRPLFHGGNG WEQRGDSAYN  240
GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2161119463ATERF1
3gcc_A6e-2161119463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0098100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066320.0AL606632.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880432.11e-108dehydration-responsive element-binding protein 1C-like
TrEMBLI1PLB21e-166I1PLB2_ORYGL; Uncharacterized protein
STRINGORGLA04G0098100.11e-167(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-24ethylene response factor 110