PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0108200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 184aa    MW: 19726.2 Da    PI: 5.3535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0108200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-181262155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++y+GVr++k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  ORGLA04G0108200.1 12 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 62
                       68*****998.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-121262IPR001471AP2/ERF domain
CDDcd000181.18E-301270No hitNo description
SMARTSM003806.1E-371376IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-221371IPR016177DNA-binding domain
PROSITE profilePS5103223.7091370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-311370IPR001471AP2/ERF domain
PRINTSPR003675.8E-101425IPR001471AP2/ERF domain
PRINTSPR003675.8E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAAAAAAAGG GCQYRGVRRR KWGKWVSEIR QPGTKTRIWL GSFESAEMAA VAHDVAALRL  60
RGRDAQLNFP GSVDRLPRPA SSRPGDIRAA AAEAADRVRR EPALVVVRGA AAAGGELAAA  120
RWAGVEVEVE QQLGGSDEEF EVDSPRLWAE MAEAMLLDPP VWAVDVSEME GPHCWAHGSL  180
WDAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-171174367ATERF1
3gcc_A3e-171174367ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0108200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316060.0AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194473.12e-75ethylene-responsive transcription factor ERF021-like
TrEMBLI1PLL31e-125I1PLL3_ORYGL; Uncharacterized protein
STRINGORGLA04G0108200.11e-126(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-25ERF family protein