PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0144200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 471aa MW: 50357.6 Da PI: 7.784

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0144200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.1	5.8e-11	272	330	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l+ l+se+ ORGLA04G0144200.1 272 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSEN 330 9***********************************************99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-18	268	332	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.139	270	333	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-9	272	330	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-11	272	327	No hit	No description
SuperFamily	SSF57959	4.01E-11	272	327	No hit	No description
CDD	cd14703	1.16E-23	273	322	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAESRIFGGL KPTKSRLLGP TIRGPPPNGA ATHAPRRILF SFSFSPESQW LSQSSTRACL 60 PPLRSPCLPA PSAASPAYPR LASSAASASA PARLRSRITL PGGRSPVPPM DPAASAAESS 120 SLSSRDVAAM PDSPPRRAAR HRRAQSEILL GAALPDDIAF DADLGVVGEV GGGGGDDYEE 180 EEEDDEEEEM EGAGGSRMFE MFLEAGGKLE TPEPAAPLPP PPARPRHQHS MSMDGSTSLA 240 SSAAGVAGRM GADAKKAISD AKLAELALVD PKRAKRILAN RQSAARSKER KMRYIAELER 300 KVQTLQTEAT TLSAQLSMLQ RDTTGLTSEN SDLKIRVQTM EQQVRLQDAL NDRLRDEIQQ 360 LKVATGQVNA NCGKVGNFGL SSFGGANPQG YQRSHIQSLL AAQQLQQLQI HSQHQQQQMH 420 LQQHHHLSAV QQQLLQEGLP LPGDLKMKGI VAASHAQNDG ASESHALRSE P

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAESRIFGGL KPTKSRLLGP TIRGPPPNGA ATHAPRRILF SFSFSPESQW LSQSSTRACL  60
PPLRSPCLPA PSAASPAYPR LASSAASASA PARLRSRITL PGGRSPVPPM DPAASAAESS  120
SLSSRDVAAM PDSPPRRAAR HRRAQSEILL GAALPDDIAF DADLGVVGEV GGGGGDDYEE  180
EEEDDEEEEM EGAGGSRMFE MFLEAGGKLE TPEPAAPLPP PPARPRHQHS MSMDGSTSLA  240
SSAAGVAGRM GADAKKAISD AKLAELALVD PKRAKRILAN RQSAARSKER KMRYIAELER  300
KVQTLQTEAT TLSAQLSMLQ RDTTGLTSEN SDLKIRVQTM EQQVRLQDAL NDRLRDEIQQ  360
LKVATGQVNA NCGKVGNFGL SSFGGANPQG YQRSHIQSLL AAQQLQQLQI HSQHQQQQMH  420
LQQHHHLSAV QQQLLQEGLP LPGDLKMKGI VAASHAQNDG ASESHALRSE P

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0144200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR855196	0.0	CR855196.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633411.1	0.0	transcription factor RF2a-like
Swissprot	Q04088	2e-83	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	I1PMM3	0.0	I1PMM3_ORYGL; Uncharacterized protein
STRING	ORGLA04G0144200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12302	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	3e-65	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]