PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0150400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 660aa    MW: 67780 Da    PI: 6.5832
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0150400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.3e-14279338155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  ORGLA04G0150400.1 279 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 338
                        57*******************666664477446**********99*************98 PP
2AP251.23e-16381432155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  ORGLA04G0150400.1 381 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 432
                        89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.67E-19279348No hitNo description
PfamPF008472.8E-11279338IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16279348IPR016177DNA-binding domain
SMARTSM003801.7E-28280352IPR001471AP2/ERF domain
PROSITE profilePS5103218.861280346IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-15280348IPR001471AP2/ERF domain
PRINTSPR003673.3E-6281292IPR001471AP2/ERF domain
CDDcd000184.15E-23381442No hitNo description
PfamPF008471.7E-10381432IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-18381442IPR016177DNA-binding domain
SMARTSM003804.3E-34382446IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18382441IPR001471AP2/ERF domain
PROSITE profilePS5103219.401382440IPR001471AP2/ERF domain
PRINTSPR003673.3E-6422442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA  60
PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVAGDG GGEAPKLENF  120
LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP  180
PQHADQGMST DASASSYACS DVLVGSCGGG GGAGGRASSH GQGLALSMST GSVAAAAGGG  240
AVVAAESSSS ENKRVDSPGG AVDGAVPRKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN  300
SCRREGQSRK GRQVYLGGYD KEDKAARAYD LAALKYWGTT TTTNFPMSNY EKELEEMKHM  360
TRQEYIAHLR RNSSGFSRGA SKYRGVTRHH QHGRWQARIG RVAGNKDIYL GTFSTEEEAA  420
EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL DSSTLPVGGA ARRLKEAEAA AAAAGGGVIV  480
SHLADGGVGG YYYGCGPTIA FGGGGQQPAP LAVHYPSYGQ ASGWCKPEQD AVIAAGHCAT  540
DLQHLHLGSG GAAATHNFFQ QPASSSAVYG NGGGGGGGNA FMMPMGAVVA AADHGGQSSA  600
YGGGDESGRL VVGYDGVVDP YAAMRSAYEL SQGSSSSSVS VAKAANGYPD NWSSPFNGMG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0150400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635553.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-136BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLI1PMT50.0I1PMT5_ORYGL; Uncharacterized protein
STRINGORGLA04G0150400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-119AP2 family protein