PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0163700.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 206aa MW: 21968.9 Da PI: 10.9191

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0163700.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.9	1.8e-34	51	168	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssas.....ns 85 +++ +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c + s+s ORGLA04G0163700.1 51 ATQGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapS----TASSSfllgkR- 137 556679********************************************************88888544432221....22222222221. PP TCP 86 ssg.............................k 89 + + ORGLA04G0163700.1 138 --PrqedheaptfwealqqqprpavsswgalvS 168 ..0333443344444444444443333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-30	54	151	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	55	109	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MASRDAATFQ VYRPMAMPTP AALPPSSQQI TMPFTAAPVD AVLPAPRKAA ATQGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS 120 CSSAPSTASS SFLLGKRPRQ EDHEAPTFWE ALQQQPRPAV SSWGALVSPS QEAQAYASSV 180 AQVHHLNLLS ALSGAATRRP AQEESR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0163700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL663019	0.0	AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855230	0.0	CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635777.1	1e-146	transcription factor TCP21
TrEMBL	A0A0D9ZNA4	1e-146	A0A0D9ZNA4_9ORYZ; Uncharacterized protein
TrEMBL	A2XVQ0	1e-146	A2XVQ0_ORYSI; Uncharacterized protein
TrEMBL	I1PN68	1e-146	I1PN68_ORYGL; Uncharacterized protein
TrEMBL	Q01HP9	1e-146	Q01HP9_ORYSA; OSIGBa0115K01-H0319F09.3 protein
STRING	OGLUM04G19130.1	1e-147	(Oryza glumipatula)
STRING	ORGLA04G0163700.1	1e-147	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-37	TCP family protein