PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0171000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 261aa    MW: 27861.4 Da    PI: 7.7843
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0171000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY208.72.1e-64272186170
              YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................llee 74 
                          eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+      aa+   +  + +                        ++e+
  ORGLA04G0171000.1  27 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQAllsptsphglldevpsfqapaslMTEQ 118
                        579*******************************************998665555554555555566668999*999999999887654444 PP

              YABBY  75 lkveeenlksnvekeesastsvssekl......senedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                           + ++++s +++     ++ +++++       ++++ + p+ +p ++r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaakn
  ORGLA04G0171000.1 119 ASPNVSSITSSNSSCA---NNAPATSMasaankATQREPQQPKnAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKN 207
                        4444444433332222...22222222233323333333444415569******************************************** PP

              YABBY 160 WahfPkihfgl 170
                        WahfP+ihfgl
  ORGLA04G0171000.1 208 WAHFPHIHFGL 218
                        *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.0E-7127218IPR006780YABBY protein
SuperFamilySSF470952.62E-7160211IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-4170210IPR009071High mobility group box domain
CDDcd000847.91E-5172208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMSSAPETFS LDHLSQHQQQ QPPPLAEQEQ LCYVHCNFCD TILAVGVPCS SLFKTVTVRC  60
GHCANLLSVN LRGLLLPAAA STANQLPFGQ ALLSPTSPHG LLDEVPSFQA PASLMTEQAS  120
PNVSSITSSN SSCANNAPAT SMASAANKAT QREPQQPKNA PSANRTSEKR QRVPSAYNRF  180
IKDEIQRIKA SNPDITHREA FSAAAKNWAH FPHIHFGLMP DQGLKKTGIQ SQDGAGECML  240
FKDGLYAAAA TAASSMGVTP F
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0171000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740170.0AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBankAK0702050.0AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634596.11e-171protein YABBY 5
SwissprotQ01JG21e-172YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-172YAB5_ORYSJ; Protein YABBY 5
TrEMBLI1PNE10.0I1PNE1_ORYGL; Uncharacterized protein
STRINGORGLA04G0171000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-57YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]