PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0175900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 251aa    MW: 27242.8 Da    PI: 7.8086
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0175900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.5e-32170228159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  ORGLA04G0175900.1 170 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHTHT 228
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-33155228IPR003657WRKY domain
SuperFamilySSF1182902.75E-28162228IPR003657WRKY domain
PROSITE profilePS5081128.897165227IPR003657WRKY domain
SMARTSM007741.3E-37170229IPR003657WRKY domain
PfamPF031065.4E-25171227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MYACMEGSQL ETACLTAALY APLCPYTPPS PPSFLAPLPS LQHKLPQLPQ LVHDHAAAAG  60
TNHGVMFSSD HGCLYPLLPG IPFCLDSGCG AAACDDDKPA GFAHLGSAEA DTSAAAAARV  120
DSEIAAAATA TTCHGPNSWW KGTEKGKMKV RRKMREPRFC FQTRSDVDVL DDGYKWRKYG  180
QKVVKNSLHP RSYYRCTHNN CRVKKRVERL SEDCRMVITT YEGRHTHTPC SDDATTGAAG  240
DHTASCAFTS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24161227874Probable WRKY transcription factor 4
2lex_A2e-24161227874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0175900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736950.0AK073695.1 Oryza sativa Japonica Group cDNA clone:J033063J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635033.11e-172probable WRKY transcription factor 12
TrEMBLI1PNJ00.0I1PNJ0_ORYGL; Uncharacterized protein
STRINGORGLA04G0175900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.17e-59WRKY family protein