PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA04G0194300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 238aa MW: 25246.8 Da PI: 10.3881

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA04G0194300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.9	2.4e-25	142	186	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ ORGLA04G0194300.1 142 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 186 69***************************************9987 PP
2	QLQ	55	2.5e-19	75	111	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k ORGLA04G0194300.1 75 SALTFMQRQELEHQVLIYRYFAAGAPVPVHLVLPIWK 111 799*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.2E-6	75	111	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.433	76	111	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.6E-11	76	110	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.072	142	186	IPR014977	WRC domain
Pfam	PF08879	9.5E-21	143	184	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MLAEGRQVYS PPPPPPPSKL PRLSGTDPTD GVVTMAAPSP LVLGLRLGLG GSGSDSSGSD 60 AEASAATVRE ARPPSALTFM QRQELEHQVL IYRYFAAGAP VPVHLVLPIW KSIAAASSFG 120 PQSFPSLTGL GSLCFDYRSS MEPEPGRCRR TDGKKWRCSR DVVPGHKYCE RHVHRGRGRS 180 RKPMEASAAV APTYLPVRPA LHTVATLATS APSLSHLGFS SASKVLLAHT TTGTTRAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	183	GRGRSRKPM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA04G0194300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110934	0.0	AK110934.1 Oryza sativa Japonica Group cDNA clone:002-173-G02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635359.1	1e-138	growth-regulating factor 12
Swissprot	Q6AWX7	1e-139	GRF12_ORYSJ; Growth-regulating factor 12
TrEMBL	I1PP24	1e-169	I1PP24_ORYGL; Uncharacterized protein
STRING	ORGLA04G0194300.1	1e-170	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6221	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	3e-37	growth-regulating factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]