PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0252700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 190aa    MW: 20047.3 Da    PI: 8.3427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0252700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384e-1226631555
                AP2 15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++AeIrdp +   r+r++lg++++ae Aa+a++ a+++l+g
  ORGLA04G0252700.1 26 FAAEIRDPAK---RARVWLGTYDSAEAAARAYDVAARNLRG 63
                       68*****843...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.108171IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-152572IPR016177DNA-binding domain
SMARTSM003804.8E-192577IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-212572IPR001471AP2/ERF domain
PfamPF008471.1E-62663IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
XXXXXXXXXX XXXXXXXXXX XXXXXFAAEI RDPAKRARVW LGTYDSAEAA ARAYDVAARN  60
LRGPLARTNF PLVSSLPLPS PHYHLPGKAA AAAPPVAGPA CSASSTVESS SGPRGPRPAA  120
TAAAVPRRRV PRPAPPAPDA GCHSDCASSA SVVDDADDAS TVRSRVAAFD LNLPPPLDRD  180
HVDLCTDLRL
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0252700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6505060.0KJ650506.1 Oryza glaberrima clone OG_BBa0063K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634065.11e-108ethylene-responsive transcription factor 7
SwissprotO803392e-22ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLI1PQQ81e-107I1PQQ8_ORYGL; Uncharacterized protein
STRINGORGLA04G0252700.11e-108(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-11ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]