PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA04G0278200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 216aa    MW: 24239.7 Da    PI: 9.7424
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA04G0278200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.96.6e-2221112194
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkdk 90 
                        lp GfrF+Ptdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp    +++ e yfF+  +++   +g   +ra    g W+a+gk+k
  ORGLA04G0278200.1  21 LPIGFRFRPTDEELLLHYLRRKVMSRPLPA-DVIPVADLAHLHPWDLP---GEGDGERYFFHLPATSCWrRGGGGSRAGGgGGAWRASGKEK 108
                        699***************************.99***************...346778999998887776258888886443899*******9 PP

                NAM  91 evls 94 
                         v++
  ORGLA04G0278200.1 109 LVVA 112
                        9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-2815112IPR003441NAC domain
PROSITE profilePS5100528.22121216IPR003441NAC domain
PfamPF023652.6E-1122110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAAEAASGGG GGYRMLPQAG LPIGFRFRPT DEELLLHYLR RKVMSRPLPA DVIPVADLAH  60
LHPWDLPGEG DGERYFFHLP ATSCWRRGGG GSRAGGGGGA WRASGKEKLV VAPRCGXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-131811412108Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA04G0278200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0674500.0AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBankAK0684460.0AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBankAK2889420.0AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBankCT8295910.0CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBankCT8295920.0CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBankCU4067440.0CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBankGU1203510.0GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627804.18e-75NAC domain-containing protein 83
TrEMBLA0A0D3EY321e-74A0A0D3EY32_9ORYZ; Uncharacterized protein
STRINGOBART01G42420.12e-75(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-19NAC domain containing protein 83