PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0010800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 198aa    MW: 21213.1 Da    PI: 6.9419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0010800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000535173123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+++F++   L  H  +H
  ORGLA05G0010800.1 51 FVCKTCNRVFPSFQALGGHRASH 73
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-849114No hitNo description
PfamPF139121.0E-125075IPR007087Zinc finger, C2H2
SMARTSM003550.115173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4945178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PROSITE profilePS501578.64292122IPR007087Zinc finger, C2H2
SMARTSM003554.892114IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-892116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKRFAFEDSD MARVLMLMSS HGQQEQALAL PVPVQLPLAA ARGDRAPERA FVCKTCNRVF  60
PSFQALGGHR ASHKKPRLDG DGDLSLSKPK LHGCSICGLE FAIGQALGGH MRRHRAMTGG  120
MPRAIVVDKK PDVVDVHVHG HDDDGGIKRG GLWLDLNHPP CDDAGDDDAE CGHNAAGAGI  180
TFHQFLDTGA MAVDCVGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0010800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939210.0AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence.
GenBankAC1085040.0AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence.
GenBankAK1089810.0AK108981.1 Oryza sativa Japonica Group cDNA clone:002-153-F01, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638278.11e-143zinc finger protein ZAT12
TrEMBLA0A0D3G2I61e-142A0A0D3G2I6_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZTE71e-142A0A0D9ZTE7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H8M31e-142A0A0E0H8M3_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PGN61e-142A0A0E0PGN6_ORYRU; Uncharacterized protein
TrEMBLA2XZN51e-142A2XZN5_ORYSI; Uncharacterized protein
TrEMBLI1PRW01e-142I1PRW0_ORYGL; Uncharacterized protein
TrEMBLQ75L041e-142Q75L04_ORYSJ; Os05g0114400 protein
STRINGOGLUM05G01060.11e-142(Oryza glumipatula)
STRINGORUFI05G01070.11e-142(Oryza rufipogon)
STRINGOS05T0114400-011e-142(Oryza sativa)
STRINGONIVA05G01090.11e-142(Oryza nivara)
STRINGORGLA05G0010800.11e-142(Oryza glaberrima)
STRINGOBART05G01050.11e-142(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-25C2H2 family protein