PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0016500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 227aa    MW: 23608.2 Da    PI: 7.0477
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0016500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.44.1e-37361481100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.............peeeredamsslvyeAearardPvyGavgv 79 
                        +CaaCk+lrr+C++ Cvlapyfp ++p+kf  +h++FGasn++kll+ +             pee+r da+ss+vyeA+ar+rdPvyG++g 
  ORGLA05G0016500.1  36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQMAssplmspswlqelPEEQRADAVSSMVYEANARIRDPVYGCAGA 127
                        7*******************************************98866555555555555589999************************* PP

             DUF260  80 ilklqqqleqlkaelallkee 100
                        i +lq+q++ lka+la++++e
  ORGLA05G0016500.1 128 ICQLQKQVNDLKAQLARAHAE 148
                        *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.97135149IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-3836146IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TVVLSPCAAC KILRRRCVDR CVLAPYFPPT  60
EPHKFTTAHR VFGASNIIKL LQMASSPLMS PSWLQELPEE QRADAVSSMV YEANARIRDP  120
VYGCAGAICQ LQKQVNDLKA QLARAHAELA GARAQHAHLV ALLCMEMAAA APPQHPTTTA  180
AAAAYCAAVG GAASPAVPVD ALYVVDGAGA AAMQASPIGW VDEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-403514910111LOB family transfactor Ramosa2.1
5ly0_B1e-403514910111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0016500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0790210.0AC079021.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0008A07, complete sequence.
GenBankAC0930890.0AC093089.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1729_E02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638880.11e-124LOB domain-containing protein 1
SwissprotQ9SK086e-59LBD11_ARATH; LOB domain-containing protein 11
TrEMBLI1PS171e-162I1PS17_ORYGL; Uncharacterized protein
STRINGORGLA05G0016500.11e-163(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-51LOB domain-containing protein 1