PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0019700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 602aa    MW: 63315 Da    PI: 8.4664
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0019700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17e-09257278526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f+++G C+ Gd C +aHg
  ORGLA05G0019700.1 257 PCPEFRKGGSCRKGDACEYAHG 278
                        8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.31E-770147IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.7E-971175IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.17771168IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.342106141IPR002110Ankyrin repeat
SMARTSM003561.2E-5252279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216252280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4257280IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6257278IPR000571Zinc finger, CCCH-type
SMARTSM0035689288311IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.559288312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MCSGPRKPST PPLPQQQKEA TVMAASLLLE LAAADDVAAV RRVVEEEKVS LGVAGLWYGP  60
SASGVARLGM ERRTAAMVAA LYGSTGVLGY VVAAAPAEAA RASETDGATP LHMAAAGGAA  120
NAVAATRLLL AAGASVDALS GSGLRAGDLL PRATAAEKAI RLLLKSPAVS PSSSPKKSAS  180
PPSPPPPQEA KKEYPPDLTL PDLKSGLFST DEFRMYSFKV KPCSRAYSHD WTECPFVHPG  240
ENARRRDPRR YSYSCVPCPE FRKGGSCRKG DACEYAHGVF ECWLHPAQYR TRLCKDEVGC  300
ARRICFFAHK PDELRAVNPS AVSVGMQPTV SSPRSSAPNG LDMAAAAAAA MMSPAWPSSP  360
ASRLKTALGA RELDFDLEML ALDQYQQKLF DKVSGAPSPR ASWGAAANGL ATASPARAVP  420
DYTDLLGSVD PAMLSQLHAL SLKQAGDMPA YSSMADTTQM HMPTSPMVGG ANTAFGLDHS  480
MAKAIMSSRA SAFAKRSQSF IDRGGRAPAA RSLMSPATTG APSMLSDWGS PDGKLDWGVQ  540
GDELHKLRKS ASFAFRGQSA MPVATHAAAA EPDVSWVNSL VKDGHATGDI FAQWPEQEQM  600
VA
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0019700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1305980.0AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBankAK1057670.0AK105767.1 Oryza sativa Japonica Group cDNA clone:001-202-E04, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankEU8475220.0EU847522.1 Oryza sativa Japonica Group clone OsLS310 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639743.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLI1PS490.0I1PS49_ORYGL; Uncharacterized protein
STRINGORGLA05G0019700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-122C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]