PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA05G0020400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

EIL

Protein Properties

Length: 81aa MW: 8626.08 Da PI: 10.286

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA05G0020400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	103.5	4.2e-32	1	58	60	113
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....X CS EIN3 60 MlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaisky....q 113 Mlk+mevcnaqGfvYgiipekgkpv++asd+Lr+WWkekv+fdrn paai+k q ORGLA05G0020400.1 1 MLKMMEVCNAQGFVYGIIPEKGKPVSSASDNLRSWWKEKVRFDRNSPAAIAKAalpaQ 58 9***************************************************965432 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	3.6E-33	1	55	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MLKMMEVCNA QGFVYGIIPE KGKPVSSASD NLRSWWKEKV RFDRNSPAAI AKAALPAQAA 60 VHLVALGAHA ALRPAEAPLS A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512, PubMed:25995326). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Required for ethylene-promoted coleoptile elongation (PubMed:25995326). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269\|PubMed:19798512, ECO:0000269\|PubMed:25995326}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA05G0020400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and metyhl jasmonate. {ECO:0000269\|PubMed:19798512}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	2e-81	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234546.1	1e-27	protein EIN3-like3
Refseq	XP_006347695.1	1e-27	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Refseq	XP_015062250.1	1e-27	ETHYLENE INSENSITIVE 3-like 1 protein
Refseq	XP_016538319.1	1e-27	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Refseq	XP_025878601.1	1e-29	LOW QUALITY PROTEIN: ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q8W3L9	1e-28	EIL2_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 2
TrEMBL	I1PS56	2e-51	I1PS56_ORYGL; Uncharacterized protein
STRING	ORGLA05G0020400.1	4e-52	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP638	38	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	2e-25	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Yang C, et al. MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice. Plant Physiol., 2015. 169(1): p. 148-65 [PMID:25995326]