PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0020600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 246aa    MW: 27599.2 Da    PI: 7.5567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0020600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.39.4e-113960223
                       --SS-EEEEEEE--TT-SS-EE CS
               WRKY  2 dDgynWrKYGqKevkgsefprs 23
                        D ++WrKYGqK++kgs++pr 
  ORGLA05G0020600.1 39 ADSWSWRKYGQKPIKGSPHPRY 60
                       69******************95 PP
2WRKY46.66.9e-151231641959
                        SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  19 efprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++r+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  ORGLA05G0020600.1 123 AVSRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 164
                        579******9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-303158IPR003657WRKY domain
SuperFamilySSF1182901.09E-83362IPR003657WRKY domain
SMARTSM007747.3E-2438165IPR003657WRKY domain
PROSITE profilePS5081119.24440166IPR003657WRKY domain
PfamPF031062.0E-64060IPR003657WRKY domain
SuperFamilySSF1182906.41E-12122164IPR003657WRKY domain
PfamPF031061.1E-11123164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-30126165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTKMSSMKAD GSVPKRRRQD VQKVVVSLKD HKVEQGPPAD SWSWRKYGQK PIKGSPHPRY  60
HHLALIPHTY TAPNVLVISQ SFACALILYI TDNFTRIRLS DQLLVRFFSL YQSINFALFV  120
DHAVSRGYYK CSSYRGCPAR KQVDKCRNDA SLLIITYTSD HNHDNYAATT TNSVQEQAHN  180
PDTSDPLSNG MSLAEVVTVA SSKLSGEEES CDFFDELEEL PVSASPLPSL SFMVQECSFS  240
DARTLL
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0020600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417990.0AK241799.1 Oryza sativa Japonica Group cDNA, clone: J065208G18, full insert sequence.
GenBankAK2880620.0AK288062.1 Oryza sativa Japonica Group cDNA, clone: J075154N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.11e-83probable WRKY transcription factor 69
TrEMBLI1PS580.0I1PS58_ORYGL; Uncharacterized protein
STRINGORGLA05G0020600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-14WRKY DNA-binding protein 65