PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA05G0035000.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 313aa MW: 36259.9 Da PI: 5.3301

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA05G0035000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.7	1.6e-12	98	144	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fYn+YAk+ GFsvrk+ +++kr g i r+fvCskeg r+++ k ORGLA05G0035000.1 98 NFYNSYAKRKGFSVRKDIVRREKRVGAIEYRRFVCSKEGIRDPSLVK 144 6***************************************9987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-10	98	141	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGEFRGTGNE DDAKCGTGNE DDAKCGKDCS TDSYMDNSSN TNDDDYAECS LRDHNKSKPN 60 DPSSSHNVFH SVEEDNVALD EYWNIVQMNF XTEDECYNFY NSYAKRKGFS VRKDIVRREK 120 RVGAIEYRRF VCSKEGIRDP SLVKPEDREF ALXEDFEYGV YDDQTNMVEQ IIQLEIRRSS 180 GRMSLNGIKK LNLLRASKQI HATEHTWLII CRQDLALIES LKIVVILYDI NLHCLETLRV 240 KDEELQNLAN NIRARDATIK EIADKLTQTA QAAEAAASTT HTMDEHRRLL CSEIERLRHY 300 KQWKDKWNNP CSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA05G0035000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC093492	1e-156	AC093492.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0059G01, complete sequence.
GenBank	AC093493	1e-156	AC093493.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0072C16, complete sequence.
GenBank	AP014961	1e-156	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619261.1	9e-63	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	I1PSK2	0.0	I1PSK2_ORYGL; Uncharacterized protein
STRING	ORGLA05G0035000.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17120	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	7e-10	FAR1-related sequence 12