PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0036200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 229aa    MW: 25096.3 Da    PI: 7.836
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0036200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.71.9e-193165135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ Cg+t+Tp+WR gp g+++LCnaCG++yrkk++
  ORGLA05G0036200.1 31 CVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRR 65
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.732561IPR000679Zinc finger, GATA-type
SMARTSM004017.9E-162575IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-132868No hitNo description
Gene3DG3DSA:3.30.50.105.6E-152966IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.44E-123166No hitNo description
PfamPF003203.3E-173165IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGSSDQKVIG IAAAAAAAAA AEEEEAGRRC CVECGATTTP MWRGGPTGPR SLCNACGIRY  60
RKKRRQELGL DKKQQQEHHP HHHQQQQQQY QRQQQQQQQE DHSDAASSVK DSSSSSSNKS  120
SSLQVIYEIV ISRSESDCEG AMEGNCVPLK RLVQQVDFLL SSTGITESCQ CVAVSCANQM  180
GLQKAANVLL FLVPIRVLTM ENNSCDILHI IRIIGRGCGI ESKTRIIDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0036200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377510.0CT837751.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639203.16e-37GATA transcription factor 23
TrEMBLI1PSL41e-167I1PSL4_ORYGL; Uncharacterized protein
STRINGORGLA05G0036200.11e-168(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2612444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-19GATA transcription factor 23