PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0037900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 91aa    MW: 10168.8 Da    PI: 11.1586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0037900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000591973455
                       HHHHHHHHHHHH...HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdr...iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       +++e+ rrR++r   ++ ++e Lr+l+P    +++++     e L +A +YI  Lq
  ORGLA05G0037900.1 19 SNKEMRRRRMRRcveVRRKMEALRRLVPGgG-GGGGEDAGGEELLFRAADYIARLQ 73
                       56777777777655589************44.555555999999********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-62687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-42988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MPPATARSNH RAACKNSGSN KEMRRRRMRR CVEVRRKMEA LRRLVPGGGG GGGEDAGGEE  60
LLFRAADYIA RLQVQVKVMQ LMVDVLEQTK D
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0037900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0874256e-91AC087425.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0676G05, complete sequence.
GenBankAP0149616e-91AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-91CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637969.16e-36transcription factor IBH1
TrEMBLA0A0D3G3H03e-59A0A0D3G3H0_9ORYZ; Uncharacterized protein
STRINGOBART05G04060.16e-60(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126