PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0145800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 198aa    MW: 21327.1 Da    PI: 9.6518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0145800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.8e-161863251
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                       +y+GVr+++ +g+Wv+eIr+p +   r r +lg++ tae Aa a++aa  
  ORGLA05G0145800.1 18 RYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATAEAAAVAHDAAVC 63
                       59****777.**********943...5*******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.08318110IPR001471AP2/ERF domain
SMARTSM003802.6E-211884IPR001471AP2/ERF domain
PfamPF008478.2E-91861IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-221866IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-151865IPR016177DNA-binding domain
PRINTSPR003673.7E-91930IPR001471AP2/ERF domain
PRINTSPR003673.7E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRVAASGGG GGGGEMMRYR GVRRRRWGKW VSEIRVPGTR ERLWLGSYAT AEAAAVAHDA  60
AVCLLRLGGG RRAAAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXRSVQ RVASDAGMAA  120
DAQLVDLRRD HPPAAAATSS SGSGVAGDGA RKQGTRGEVS DTYWCRNGED GSRRSWSSGS  180
EELIVYEGLS VDDMEILM
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0145800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1248361e-141AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBankAC1376231e-141AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149611e-141AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638993.18e-50ethylene-responsive transcription factor ERF014
TrEMBLI1PVR01e-105I1PVR0_ORYGL; Uncharacterized protein
STRINGORGLA05G0145800.11e-106(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-07ERF family protein