PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0158500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 509aa    MW: 56128 Da    PI: 5.8623
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0158500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-11199228433
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                         k err+++NReAAr+sR+RKka++++Le+
  ORGLA05G0158500.1 199 AKTERRLAQNREAARKSRLRKKAYVQQLET 228
                        699*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-6196272IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.381198242IPR004827Basic-leucine zipper domain
PfamPF001701.1E-7199229IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.45E-6200243No hitNo description
CDDcd147081.10E-20200252No hitNo description
Gene3DG3DSA:1.20.5.1705.2E-7200229No hitNo description
PROSITE patternPS000360203218IPR004827Basic-leucine zipper domain
PfamPF141444.9E-29281355IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MVQGEGSSWR MANDHDRAVP HSQAVAYGIQ GHAVLAAPPA NFLELQPAAA AYFGELEKAL  60
IHGTSAGAGV DHGMIQSDAY TESGYLAARP PTLEIFPSWP MSHLQEPYSN SQSVGSTTDS  120
SSAQNTMSQA ELVSPASMRS DSGQEQQQQE VLMVTIDDYN YKQGLGAAIA TAPSFQQHAG  180
GLDMRKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL  240
QRARSQGLFP GGCSAPGDMS SGAVMFDMEY TRWIDDDSKC MAELQGALQA QLPDGNLGAI  300
VEECMRHYDE LFHLRAVLAS SDVFHLMTGM WAAPAERCFL WMAGFRPSEI LKMLIPQLDP  360
LTEQQLMGMC SLQQSSEQTE EALAQGLHQL HQSLADAVGG GPLNDGADVA NYTGLMALAL  420
GRLENLESFY PKADNLRQET LHHMRRILTT RQTARCFLSI GEYNRRLRAL SSLWASRPRE  480
NFIATENVSP TGTEFQVIQQ SQQNQFSGF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0158500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095200.0AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639065.20.0transcription factor TGAL5 isoform X9
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLI1PW370.0I1PW37_ORYGL; Uncharacterized protein
STRINGORGLA05G0158500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-137bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]