PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA05G0158600.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 389aa MW: 42140.9 Da PI: 6.1904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA05G0158600.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00028	212	228	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C+ C+k F+r n++ ORGLA05G0158600.1 212 FVCHVCNKAFNRYNNMQ 228 89*********988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50868	8.135	258	274	IPR003616	Post-SET domain
SuperFamily	SSF57667	6.88E-5	284	320	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.1E-4	287	320	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG 60 TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGCSSED 120 APMDEDEEDD DDDDEEEETE DDEEKAAGLE GCKVEEEERE QVHSEGSKYY VSVGGGEDQS 180 SNAGDVDAGA ACRGRRYWIP TPAQILIGPV QFVCHVCNKA FNRYNNMQQM HMWGHGREYR 240 KGPESLKGTQ ATATLAMLKL PCYCCAAGCR NNVGHPRARP LKDFRTLQTH YKRKHGAKPF 300 ACRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGGG HFPVAAAAAH 360 AAAAPPKQQQ RIIRFDDAMA PTHGGGLMN

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG  60
TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGCSSED  120
APMDEDEEDD DDDDEEEETE DDEEKAAGLE GCKVEEEERE QVHSEGSKYY VSVGGGEDQS  180
SNAGDVDAGA ACRGRRYWIP TPAQILIGPV QFVCHVCNKA FNRYNNMQQM HMWGHGREYR  240
KGPESLKGTQ ATATLAMLKL PCYCCAAGCR NNVGHPRARP LKDFRTLQTH YKRKHGAKPF  300
ACRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGGG HFPVAAAAAH  360
AAAAPPKQQQ RIIRFDDAMA PTHGGGLMN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA05G0158600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102658	0.0	AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640742.1	0.0	protein TRANSPARENT TESTA 1 isoform X1
TrEMBL	I1PW38	0.0	I1PW38_ORYGL; Uncharacterized protein
STRING	ORGLA05G0158600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	4e-93	WIP domain protein 4