PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0167700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 292aa    MW: 33263.7 Da    PI: 12.2626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0167700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000634163123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C  Cg++F++   L  H  +H
  ORGLA05G0167700.1 41 FECRTCGRRFPTFQALGGHRASH 63
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.53E-53967No hitNo description
PfamPF139122.6E-114065IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5544168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSKRQFGEMD GGIDTARVLM LLSRRRQQHG DVGHARAARV FECRTCGRRF PTFQALGGHR  60
ASHKRPRHGA ERAPRPAGDD DVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXRT  240
GAPSAGWSSP SGRRSAGTCG GTAPPPATSR RRVWRPTTLS LETSAPAGFA WT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0167700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-132CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.18e-14C2H2 family protein