PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0177200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 326aa    MW: 34884.2 Da    PI: 4.5142
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0177200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY841.4e-26125185259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg+ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+edp++ +itY g+H+++
  ORGLA05G0177200.1 125 EDGFLWRKYGQKEIKNSKHPRLYYRCSYKddhGCTATKQVQQSEEDPSIYVITYFGDHTCS 185
                        7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-27120185IPR003657WRKY domain
SuperFamilySSF1182903.79E-25122186IPR003657WRKY domain
SMARTSM007741.1E-39124186IPR003657WRKY domain
PfamPF031062.9E-26125184IPR003657WRKY domain
PROSITE profilePS5081121.058125187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
LSEVAHMALI ATGATSSPAS SMASELMAQG RESAAVLEAL LHGASLPPAH RGAHALAAEI  60
LRCCDRALAA LRAGGDAESS SPGTKRSKSA TAQPATRRRR RATASGGGAA AAAEPARVEM  120
ARTSEDGFLW RKYGQKEIKN SKHPRLYYRC SYKDDHGCTA TKQVQQSEED PSIYVITYFG  180
DHTCSCQTAA AMDDDDDDEN SQHFVIHFGS ATASRSGSPP LLYDDDDGDV WRETAATPPS  240
SRQSRSSPEV DGEESGVKMS KEEPVDSCPA PSAVSSPADV VSCSSPAMEP DLLRCLNWDD  300
DFGDSSFVDA DEFMNFDEID LFQIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21120184468OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0177200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638904.11e-167probable WRKY transcription factor 70
TrEMBLI1PWM40.0I1PWM4_ORYGL; Uncharacterized protein
STRINGORGLA05G0177200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.15e-22WRKY DNA-binding protein 62