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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA05G0190100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 425aa MW: 45416.8 Da PI: 6.1368 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA05G0190100.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 260.2 | 7.4e-80 | 37 | 423 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely..kalppsetsekn...sseelaalkl..fse 86
++lLl+cA a++s+d +laq++++ l+++as++gdp qRl++ +++AL ar r + +a++ e + +++++++l +++
ORGLA05G0190100.1 37 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPSQRLTSWLLRALVARACRLCAAAPagAAVEFLERG--RappWGRAMSVTELadYVD 126
699***************************************************44443300333333333..2356555555566688*** PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
++P+++f++ + N aIl+av+g+++vH++D+++++++QWp+L++ L++Rp+g+p +RiT+ + ++ + + +e+g rLa fA++ gv+
ORGLA05G0190100.1 127 LTPWHRFGFTASNAAILRAVAGASAVHVVDLSVTHCMQWPTLIDVLSKRPGGAPAIRITVPSVRPAVpplLAVSSSELGARLAIFAKSKGVQ 218
***********************************************************9887555578889999***************** PP
GRAS 176 fefnvl..............vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
+efnv+ ++++l+++ ++ +L ++ gEa++Vn++ l ++ +++rd +L++v+ l+P +v+v++++ad++s+
ORGLA05G0190100.1 219 LEFNVVesatttspkktsttLCQELASVlsDPPSLGLRDGEAVVVNCQSWLRHVA------PDTRDLFLDTVRALNPCLVTVTDEDADLGSP 304
******998888776655443344443367888889999************9998......66789************************** PP
GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
s++ r++ ++++++ l+d+l++++p++s r E++ +gr+i++v+ e + er e ++ er+++ GF v ++e+aa+++++ll++
ORGLA05G0190100.1 305 SLASRMAGCFDFHWILLDALDMSAPKDSPRRLEQEAA-VGRKIESVIGEEDGA--ERSEPGARLAERMSRKGFAGVVFDEEAAAEVRRLLSE 393
*******************************999999.**********99988..9************************************ PP
GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++ g+ v+ e++ lvl+Wk+++ v++ aW+
ORGLA05G0190100.1 394 HA-TGWGVKREDDMLVLTWKGHAAVFTGAWT 423
**.99*************************5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MDMEHELRGG GVGAAAHGHG SICFSGGPVL VDGRRIQQLL LHCAAALESN DVTLAQQAMW 60
VLNNIASSQG DPSQRLTSWL LRALVARACR LCAAAPAGAA VEFLERGRAP PWGRAMSVTE 120
LADYVDLTPW HRFGFTASNA AILRAVAGAS AVHVVDLSVT HCMQWPTLID VLSKRPGGAP 180
AIRITVPSVR PAVPPLLAVS SSELGARLAI FAKSKGVQLE FNVVESATTT SPKKTSTTLC 240
QELASVLSDP PSLGLRDGEA VVVNCQSWLR HVAPDTRDLF LDTVRALNPC LVTVTDEDAD 300
LGSPSLASRM AGCFDFHWIL LDALDMSAPK DSPRRLEQEA AVGRKIESVI GEEDGAERSE 360
PGARLAERMS RKGFAGVVFD EEAAAEVRRL LSEHATGWGV KREDDMLVLT WKGHAAVFTG 420
AWTPN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC113332 | 0.0 | AC113332.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1057_B02, complete sequence. |
| GenBank | AC130597 | 0.0 | AC130597.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017K09, complete sequence. |
| GenBank | AK070489 | 0.0 | AK070489.1 Oryza sativa Japonica Group cDNA clone:J023050L12, full insert sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
