PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0226800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 159aa    MW: 16962.6 Da    PI: 5.573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0226800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-096282346
                       -HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                       +W++Iar+++ gRt++++k++w++
  ORGLA05G0226800.1  6 RWSKIARYLP-GRTDNEIKNFWRT 28
                       5*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.711134IPR017930Myb domain
CDDcd001671.60E-8228No hitNo description
Gene3DG3DSA:1.10.10.609.2E-11329IPR009057Homeodomain-like
SuperFamilySSF466892.11E-7436IPR009057Homeodomain-like
PfamPF002494.3E-7628IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
SLGFFRWSKI ARYLPGRTDN EIKNFWRTKI QKKHRKSTDG IYATTTSESI MPAATVHQNT  60
VAEDQGSSSV SGRTTTATVA VTQEYAIEAP TPSGMSSGSY LDQLQPGYAS SIHGGQDGGA  120
AAAAAGDVVV SDEFLAASSD NFWALEDLWP TVQSLHGNC
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0226800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209860.0AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAC1209900.0AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639020.11e-107transcription factor MYB21
TrEMBLI1PY201e-114I1PY20_ORYGL; Uncharacterized protein
STRINGORGLA05G0226800.11e-115(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-18myb domain protein 21