PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0231500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 501aa    MW: 53142.2 Da    PI: 6.2953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0231500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.61.5e-108784542374
               GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                        v+l+++cA a+++gd ++a   L+  +e+    p+  + + R+ ++f+ ALa+rl+   ++   + pp + +     e+   ++ f+e+ P+
  ORGLA05G0231500.1  78 VNLMVTCAGAIQAGDYAAAAGSLSDAREIfaKMPTTrTGIGRVLTHFADALAERLFPAFPQ---SAPPPPPP---RGEQRELFRGFYEAGPY 163
                        6899************************98644444499*****************94443...33444444...4555567899******* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        lkf+hl+aNqaIlea+eg++ vH+iDf ++ G+QWp+L+qaLa Rp+gpp lRiTg+g++++g+++el+ +g rLa+fA+++ vpf f+ ++
  ORGLA05G0231500.1 164 LKFAHLAANQAILEAFEGCNSVHVIDFALTDGIQWPSLIQALAVRPGGPPFLRITGIGPHAAGNRDELRDVGLRLAEFARSCSVPFAFRGIA 255
                        ***********************************************************9999***************************** PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                        a++l+ l++++++v pgEa+a+n+vlqlhrll ++ + +      ++d vL+ v s++P+v++vveqeadhn++s+lerf+++l yy+++fd
  ORGLA05G0231500.1 256 ADQLDGLRPWMFQVAPGEAVAINSVLQLHRLLVDQDAAAAasfpaPIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNSLFYYASMFD 347
                        *******************************9544333333455599********************************************* PP

               GRAS 270 sleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                        s+ea   +     + + + +++l+ ei ++v+ eg++r+erhe++ +W erl++ G++++pl+ +   qa + lr++++ g+ v+e+ g l+
  ORGLA05G0231500.1 348 SFEAISRHGGgdGAGNPLAEAYLQGEIADIVSREGSSRVERHEQMPRWVERLRRGGMTQLPLGATGLWQAVMQLREFSGAGFGVQENGGFLT 439
                        **987433334599999*************************************************************************** PP

               GRAS 360 lgWkdrpLvsvSaWr 374
                        l+W++++L+s+SaWr
  ORGLA05G0231500.1 440 LTWHSQRLYSASAWR 454
                        **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.95651434IPR005202Transcription factor GRAS
PfamPF035145.3E-10678454IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAQFGGFGGW SAMDVAAAAA AALGNVSGVV YHADPAAAVY ASLVPGMAVV PGRAPPSAVQ  60
IEAARRWKEL EKMALRSVNL MVTCAGAIQA GDYAAAAGSL SDAREIFAKM PTTRTGIGRV  120
LTHFADALAE RLFPAFPQSA PPPPPPRGEQ RELFRGFYEA GPYLKFAHLA ANQAILEAFE  180
GCNSVHVIDF ALTDGIQWPS LIQALAVRPG GPPFLRITGI GPHAAGNRDE LRDVGLRLAE  240
FARSCSVPFA FRGIAADQLD GLRPWMFQVA PGEAVAINSV LQLHRLLVDQ DAAAAASFPA  300
PIDGVLDWVA SMNPRVFTVV EQEADHNKSS LLERFTNSLF YYASMFDSFE AISRHGGGDG  360
AGNPLAEAYL QGEIADIVSR EGSSRVERHE QMPRWVERLR RGGMTQLPLG ATGLWQAVMQ  420
LREFSGAGFG VQENGGFLTL TWHSQRLYSA SAWRATAGKK MTMMASGAAD AMEESQNSNT  480
NGGGGGGSSG GGHGALNQIM Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-4411945442375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0231500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0988320.0AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence.
GenBankAK1072560.0AK107256.1 Oryza sativa Japonica Group cDNA clone:002-125-G08, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.10.0DELLA protein SLR1
TrEMBLI1PY670.0I1PY67_ORYGL; Uncharacterized protein
STRINGORGLA05G0231500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-87GRAS family protein