PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0237500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 330aa    MW: 35842.2 Da    PI: 6.3166
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0237500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.71.8e-26174232259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers e p v++itY  eH h 
  ORGLA05G0237500.1 174 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKMVERSPEKPGVLVITYIAEHCHA 232
                        699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.369168234IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-26169234IPR003657WRKY domain
SuperFamilySSF1182901.44E-23171234IPR003657WRKY domain
SMARTSM007742.4E-31173233IPR003657WRKY domain
PfamPF031061.3E-21175231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTITHASSLS RFHPLLKKLI MEYSNDWDLQ ALVRSCGTAV ADSEPEPPAA PSTTRRAEAE  60
TVVVGRAGGV PEFVGQPVRS AAASFYDLEY LDLYHELPRA PFLVTAPSTS RERGEGGEHE  120
VLISFPAIAS TSGQGRKQPG RKPGVRTARP KRSKKSQLKK VVCEVPVADG GVSTDLWAWR  180
KYGQKPIKGS PYPRGYYKCS SLKACMARKM VERSPEKPGV LVITYIAEHC HAVPTQLNSL  240
AGTTRNNKPA SPDHQQQQQP SPGGASTDEA AAAAAAKTED SADTTCSMAD DENDLWAPVE  300
MDMDDFFGPF DDDLDHFLDD DAVLGRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-18155235280Disease resistance protein RRS1
5w3x_D4e-18155235280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA05G0237500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638808.10.0WRKY transcription factor 22-like
TrEMBLI1PYC70.0I1PYC7_ORYGL; Uncharacterized protein
STRINGORGLA05G0237500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-36WRKY DNA-binding protein 27