PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0005000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 199aa    MW: 21558.5 Da    PI: 9.8329
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0005000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.63.1e-2533138197
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                        f+kv tpsdv+k++rlv+pk++ae++         ++ ++ l +ed +g       +W+++++y+ +s++yv+tkGW+++v++++L +gD+v
  ORGLA06G0005000.1  33 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgpaARTSPAGTVLCFEDARGgggggdSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTV 124
                        99***************************999445557789*****9999****************************************** PP

                        EEEE-SSSEE..EEEEE CS
                 B3  81 vFkldgrsefelvvkvf 97 
                         F    r +++l++  +
  ORGLA06G0005000.1 125 SFC---RAGARLFIDCR 138
                        **9...44555666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-3327150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-2529133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-1732126No hitNo description
PROSITE profilePS5086311.6633141IPR003340B3 DNA binding domain
PfamPF023622.6E-2233139IPR003340B3 DNA binding domain
SMARTSM010191.3E-1533141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MATIVAWESR SLQLQGGGGG HGGGGGERRE YMFEKVVTPS DVGKLNRLVV PKHYAEKYFP  60
LGPAARTSPA GTVLCFEDAR GGGGGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA  120
GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL  180
FGVDLQLRAD ASPALDLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-41291404113B3 domain-containing transcription factor NGA1
5os9_B1e-41291404113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0005000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankCT8299120.0CT829912.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128K13, full insert sequence.
GenBankKC0191730.0KC019173.1 Oryza rufipogon cultivar RBPH54 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642534.11e-111B3 domain-containing protein Os06g0107800
SwissprotQ5VS551e-112Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A0D3FL061e-142A0A0D3FL06_9ORYZ; Uncharacterized protein
TrEMBLI1PYT81e-142I1PYT8_ORYGL; Uncharacterized protein
STRINGORGLA06G0005000.11e-143(Oryza glaberrima)
STRINGOBART03G25130.11e-143(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.14e-41B3 family protein