PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA06G0005200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24258.7 Da    PI: 10.0177
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA06G0005200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.4e-281968251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  ORGLA06G0005200.1 19 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 68
                       8*********************************************9986 PP
2K-box59.11.9e-2090177996
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        ++ ++  +++ +++ L  ei++ +   R+++Ge+Les+sl+eL+ Le q+eksl++iR +K++ l+++i++lq++ek l+een  L  
  ORGLA06G0005200.1  90 KKPRELTNMKSQSETLAMEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKQKKLMDKISQLQQQEKILSEENALLLD 177
                        45567889***************************************************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.0951070IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-241232IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001266IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-311269IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-271392IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251966IPR002100Transcription factor, MADS-box
CDDcd002657.48E-322079No hitNo description
PRINTSPR004041.4E-243247IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-244768IPR002100Transcription factor, MADS-box
PfamPF014864.1E-2094177IPR002487Transcription factor, K-box
PROSITE profilePS5129712.23895187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAAAGGQQRR RGGRREMRRI EDTTRRQVTF SKRRKGLLKK ASELSVLCDA EVALLVFSPR  60
GRFFHFASAP SLEGTIDRYI SHTQEAPANK KPRELTNMKS QSETLAMEID TVEAYTRKMQ  120
GENLESCSLQ ELHGLEMQME KSLSSIRLQK QKKLMDKISQ LQQQEKILSE ENALLLDQGK  180
VQHAPIGAPA REMNQNQHVQ DIDVDTELVI GRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA06G0005200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410550.0AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642542.11e-156MADS-box transcription factor 50-like isoform X2
SwissprotA2Z9Q75e-55MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLA0A0P0WS551e-155A0A0P0WS55_ORYSJ; Os06g0108500 protein
TrEMBLI1PYU01e-155I1PYU0_ORYGL; Uncharacterized protein
STRINGOS06T0108500-011e-155(Oryza sativa)
STRINGORGLA06G0005200.11e-155(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174341010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-45AGAMOUS-like 20